General
- Fixed bug accessing files in
app/www/ (#166)
- Improved documentation
- Added vignette announcing release of
v0.2.1
- Added highly visible links to Blog, YouTube, and NEWS file
Table Generator
- Made the html output in the app look slightly more “CSR-like” using minor formatting tricks (#181)
- Arranged visits in chronological order for dropdown list found in Stat blocks (#154)
- Fixed bug where wrong options were being passed on some lab tables (#169)
- Fixed bug where draggable blocks were not working without inclusion of datasets with ATPT (#173)
Population Explorer
- Fixed bug where selected filters were not being applied when ‘Apply Filters’ was toggled on (#175)
- Fixed bug where plots’ visual appeal was destroyed when faceting variable labels were too long (#200)
- Fixed bug where scatter plot wouldn’t display by categorical variable with
NA values (#192)
- Allowed for one-element lists in heatmap axis dropdowns (#214)
Individual Explorer
- Updated the look of the time visualization (#194)
- Moved the event description to a tooltip instead of a label
- Incorporated end dates (where applicable) to display ranges
- Removed the auto-zoom when multiple groups were selected
- Added RTF export option for download from the Table Generator.
- Cleaned up JS to ‘standard analyses’ drop down.
- Created “ALL” as dropdown option for ‘standard analysis’ Table 41 instead of auto populating all available weeks in the drop zone.
- added protocol / study id in prominent location on each tab
- designed
ATPT variable integration in the Table Generator (when present in data)
- added
OS Health & riskmetric badges to the README
- engineered more user-friendly function to create the table generator output from the block data
- ensured Table Generator output automatically updates the table name when a ‘standard analysis’ is selected
- Fixed some Population Explorer filtering issues
- Added an
app.R file so that shiny app can be ran directly from shiny::runGitHub() or runUrl()
- automated a footnote with Source and Run Date in table generation
- allowed custom user-defined footnotes
- allowed the selection of ‘All’ when a time/visit-based statistic is chosen in the table generator
- cleaned up downloadable R Script to replicate table generator output
- fixed bug where
data_from was erroneously listed as a grouping option in the population explorer
- cleaning up
devtools::check() & preparing for CRAN release.
- unfortunately, had to revert back to importing
tippy 0.1.0 since it is the latest available version on CRAN and CRAN pkgs cannot depend on package versions under development.
- created a new toggle on the
Data tab that allows users to select which CDISC pilot study data sources they wish to use in the app.
- Minor bug improvements
- For
tippy package, added lower bound on to version 1.0.0 since it includes more user friendly options.
This release (PR #65) performs a lot of functions, testing on many non-pilot ADSL files to ensure app’s robustness beyond just the CDISC pilot data:
- closes #64: Agg class objects lost “droppability” when only ADSL uploaded
- gets rid of annoying font awesome message about verifying an icon exists
- updates gt code that was deprecated
- Made sure ‘PARAM’ exists in the data when trying to label a block
- got rid of unnecessary argument in col_for_list() and col_for_list_expr()
- added some code that helped the FREQ block produce the correct results when ran locally (via a reproducibility script)
- a little code clean up for readability
This release adds meat to the previous skeleton version of tidyCDISC. The initial development release was intended to be a “bare bones” platform that could serve as a foundation to build a great clinical data exploratory tool. Version 0.0.1 enriches the user experience by adding useful & commonly needed features for analysis. For more on this release, see the announcement on our blog.
- Major Features added, by tab:
-
Table Generator
- New “STAT Blocks”, such as
Y FREQ, MAX FREQ, NON-MISSING, and a pair of NESTED FREQ blocks
- Interact with
ADAE
- 17 new ‘standard analysis’ tables in the
ADAE and ADLB space.
- An R Script download-er to reproduce analysis performed in the app
-
Population Explorer
- New Chart types
- line plot - means over time
- Heat map - endpoint correlations
- Kaplan Meier Curve (when
TTE class data uploaded)
- Upgraded
pkgdown site documentation to be more robust and hassle-free for developers
- Depends on updated version of IDEAFilter (>= 0.1.0.9000)
- Squashed bugs and other minor improvements
- Added a
NEWS.md file to track changes to the package.